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Image Search Results
Journal: International Journal of Biological Sciences
Article Title: ELK3 Suppresses Angiogenesis by Inhibiting the Transcriptional Activity of ETS-1 on MT1-MMP
doi: 10.7150/ijbs.8095
Figure Lengend Snippet: The Sin3A co-repressor regulates ELK3 transcription in HUVECs. (A) The MT1-MMP promoter activity in several cell lines: 293 (human embryonic kidney cells), L-132 (human embryonic pulmonary epithelial cells) and HUVECs (human umbilical vein endothelial cells). The 1.5 kb MT1-MMP promoter was co-transfected with an empty vector (pcDNA3.1), ETS-1 or ELK3 cDNA. After 24 h, the luciferase activity was measured. (B) The protein expression levels of Sin3A in 293 cells, L-132 cells and HUVECs. The proteins were isolated from the 3 cell lines and separated by SDS-PAGE to detect Sin3A. β-actin was used as an internal control. The density of bands was measured by GelQuant.ELK3 software (lower table) (C) Confirmation of Sin3A protein expression in HUVECs following ELK3 overexpression by Western blotting. The ELK3 expression plasmid was transfected into the HUVECs. ELK3 overexpression was confirmed by Western blotting. Sin3A protein expression decreased in response to ELK3 overexpression in HUVECs. The intensity of bands was accessed by GelQuant.ELK3 software (lower table) (D) Sin3A overexpression in HUVECs almost completely abolished ELK3 expression. The intensity of bands was evaluated by GelQuant.ELK3 software (lower table). *p < 0.01 in comparison between ETS-1 and ELK3 transfected cells.
Article Snippet: Next, the membrane was incubated with monoclonal anti-Sin3A (Santa Cruz Biotechnology, sc-994) (1:1000 dilution), anti-ELK3 (
Techniques: Activity Assay, Transfection, Plasmid Preparation, Luciferase, Expressing, Isolation, SDS Page, Software, Over Expression, Western Blot
Journal: Viruses
Article Title: IFI16 Mediates Deacetylation of KSHV Chromatin via Interaction with NuRD and Sin3A Co-Repressor Complexes
doi: 10.3390/v17070921
Figure Lengend Snippet: Immunoprecipitation (IP) of IFI16 followed by label-free quantitative mass spectrometry (IP-LFQ-MS) analysis. Whole-cell lysates of latently infected BCBL-1 cells were immunoprecipitated with two separate anti-IFI16 antibodies: anti-IFI16 mouse monoclonal (Ms), anti-IFI16 rabbit polyclonal (Rb), or IgG (Rb), followed by purification of the co-precipitated proteins using Protein A/G Dynabeads (two biological replicates, each). Subsequently, on-bead trypsin digestion and LC-MS/MS were performed to identify the co-precipitated proteins. ( A ) Venn diagram of proteins enriched (Log2 fold change ≥ 0.6) in the two IPs using mouse and rabbit antibodies against IFI16, compared to IgG controls. Proteins common to both the IPs are represented in orange, while those exclusive to the Ms antibody are represented in pink, and those exclusive to the Rb antibody are represented in green. ( B , C ) Volcano plot of proteins enriched in IFI16 IP using the Rb antibody ( B ), and the Ms antibody ( C ) compared to IgG controls. Proteins identified by LC-MS/MS were analyzed for differential abundance between IP conditions, and log2 fold change and −log10 p -values were calculated for each protein. Highlighted proteins (colored dots) indicate the proteins of interest: Red: core subunit proteins common to both the NuRD complex and the Sin3A complex (HDAC1, HDAC2, RbAp46, and RbAp48). Orange: proteins of the NuRD complex, other than the core subunit (CHD4, MTA1, MTA2, and MBD2/3). Pink: proteins of the Sin3A complex, other than the core subunit (Sin3A and SAP18). Green: IFI16 itself (bait). The dashed lines indicate the Log2FC ≥ 0.6 threshold. ( D ) Heatmap showing the Log2 fold change values for the highlighted proteins of interest, comparing the two IFI16 IPs, Ms and Rb antibodies versus IgG controls. Fold changes were calculated from LFQ intensities using duplicate replicates per condition. Proteins consistently enriched across both antibody conditions support their role as robust interactors of IFI16. ( E ) The label-free quantitation intensities (LFQ) and sequence coverage (SC%) of the proteins of interest.
Article Snippet: The antibodies used for this study are: IFI16, anti-mouse (Santa Cruz Biotechnology, Dallas, TX, USA, SC-8023); IFI16, anti-rabbit (Millipore Sigma, HPA073514); KSHV LANA, anti-rabbit (In-house); HDAC1, anti-rabbit (Proteintech, Rosemont, IL, USA, 10197-1-AP); HDAC1, anti-goat (Origene, Rockville, MD, USA, TA348968); HDAC2, anti-rabbit (Proteintech, 12922-3-AP); CHD4, anti-rabbit (Cell Signaling, 12011);
Techniques: Immunoprecipitation, Mass Spectrometry, Infection, Purification, Liquid Chromatography with Mass Spectroscopy, Quantitation Assay, Sequencing
Journal: Viruses
Article Title: IFI16 Mediates Deacetylation of KSHV Chromatin via Interaction with NuRD and Sin3A Co-Repressor Complexes
doi: 10.3390/v17070921
Figure Lengend Snippet: Interaction of IFI16 with CHD4 and Sin3A. ( A ) Proximity ligation assay (PLA, red) was performed for CHD4, Sin3A, CoREST, and IgG with IFI16 in BCBL-1 cells. The red channel shows the PLA puncta. Also, IFA (green) for KSHV LANA was conducted in the same experiment. White arrowheads in the enlarged image point to the colocalization (yellow) between the PLA dots and KSHV LANA. ( B ) The quantification of the PLA dots is represented as PLA dots/cell in a swarm plot. Kruskal–Wallis test with Dunn’s multiple comparisons test was performed (BioRender.com). p < 0.05 (*), p < 0.0001 (****).
Article Snippet: The antibodies used for this study are: IFI16, anti-mouse (Santa Cruz Biotechnology, Dallas, TX, USA, SC-8023); IFI16, anti-rabbit (Millipore Sigma, HPA073514); KSHV LANA, anti-rabbit (In-house); HDAC1, anti-rabbit (Proteintech, Rosemont, IL, USA, 10197-1-AP); HDAC1, anti-goat (Origene, Rockville, MD, USA, TA348968); HDAC2, anti-rabbit (Proteintech, 12922-3-AP); CHD4, anti-rabbit (Cell Signaling, 12011);
Techniques: Proximity Ligation Assay
Journal: Viruses
Article Title: IFI16 Mediates Deacetylation of KSHV Chromatin via Interaction with NuRD and Sin3A Co-Repressor Complexes
doi: 10.3390/v17070921
Figure Lengend Snippet: IFI16’s role in the interaction between HDAC1 and the NuRD and Sin3A complexes. ( A ) IFI16 was knocked down in BCBL-1 using shIFI16 lentiviral transduction. Control (shC) and KD (shIFI16) cells were subjected to PLA (yellow) for CHD4 ( i ) and Sin3A ( ii ) with HDAC1. IFA (green) for IFI16 shows IFI16 KD efficiency. A swarm plot for the corresponding PLA panels represents the number of PLA dots/cell. ( B ) The recruitment of chromatin remodeling complexes, NuRD, Sin3A, and CoREST, to the ORF63 promoter was studied by ChIP using anti-Sin3A, anti-CHD4, and anti-CoREST antibodies, respectively. Error bars represent mean ± standard deviation (SDEV) from three independent biological replicates. Statistical significance was determined by unpaired two-tailed Student’s t -test; p < 0.001 (***), p < 0.0001 (****).
Article Snippet: The antibodies used for this study are: IFI16, anti-mouse (Santa Cruz Biotechnology, Dallas, TX, USA, SC-8023); IFI16, anti-rabbit (Millipore Sigma, HPA073514); KSHV LANA, anti-rabbit (In-house); HDAC1, anti-rabbit (Proteintech, Rosemont, IL, USA, 10197-1-AP); HDAC1, anti-goat (Origene, Rockville, MD, USA, TA348968); HDAC2, anti-rabbit (Proteintech, 12922-3-AP); CHD4, anti-rabbit (Cell Signaling, 12011);
Techniques: Transduction, Control, Standard Deviation, Two Tailed Test